Tortilla eggs are the fastest way to spice up your mornings! These baked Southwest-inspired eggs are like miniature breakfast burritos, without the effort. Perfect for a make ahead breakfast idea, these little tortilla eggs in a muffin pan are a fun spin on my classic muffin pan eggs. They are so easy to customize and even easier to enjoy!

A plate of mini Mexican Breakfast Cups filled with melted cheese, diced tomatoes, onions, and cilantro, arranged in a circle with a small bowl of salsa in the center.
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Truthfully, I wasn’t sure what to call these delicious little bites. I finally landed on tortilla eggs – but maybe Southwest baked eggs is better? Whatever I decide to call them, they are a delicious way to start my day.

Simply whisk up the eggs and add them to a little bed of tortilla in a muffin pan. I’ll show you all my favorite toppings, of course, and easy ways to customize the egg filling, too.

A close-up of a small savory dish: Mexican Breakfast Cups featuring scrambled eggs, topped with parsley, diced tomatoes, and onions, all served in a white edible shell.

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Shopping List

  • Mini Corn Tortillas
  • Eggs
  • Taco Seasoning
  • Chihuahuah Cheese
  • Chorizo (optional)
  • Pico de Gallo (or make pico de gallo from scratch with tomato, cilantro, onion, jalapeño and lime)
A plate with several Mexican Breakfast Cups topped with diced tomatoes and herbs, accompanied by a side bowl of chopped vegetables. One mini egg muffin is on a separate white plate.

Variations

  • Add Ham or Sausage
  • Add Sautéed Peppers
  • Use your Favorite Cheese
  • Add Black Beans or Pinto Beans
  • Diced Tomatoes
  • Add a can of Green Chiles
Close-up of Mexican Breakfast Cups garnished with herbs and diced tomatoes, accompanied by a bowl of fresh salsa on a white plate.

Tip from my Test Kitchen

Be sure to warm the tortillas. This helps prevent them from tearing apart when you place them in the muffin pan! I like to warm a small stack of tortillas, placed inside a moist paper towel, for about 30 seconds in the microwave.

A white plate with small Mexican Breakfast Cups filled with melted cheese arranged in a circle around a bowl of diced tomato, onion, and cilantro salsa. A hand uses a spoon to scoop salsa into one of the tortilla cups.

Serving Suggestions

Top these little tortilla egg cups with any of your favorite Southwest inspired toppings! I’ve got so many fun ideas.

taco toppings
A close-up of a Mexican Breakfast Cup filled with scrambled eggs, topped with diced tomatoes and cilantro.
Mexican Breakfast Cups: Small tortilla egg cups filled with eggs, topped with chopped tomatoes, jalapenos, and cilantro, served on a white plate with a side of salsa.
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Tortilla Eggs

Tortilla baked eggs are sure to spice up your mornings! These Tex-Mex style egg muffin cups are like mini breakfast burritos, simplified.
Prep: 5 minutes
Cook: 15 minutes
Total: 20 minutes
Servings: 12
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Ingredients  

Tortilla Baked Eggs

  • 12 mini corn tortillas
  • 8 ounces chorizo cooked, crumbled
  • 12 large eggs
  • ½ teaspoon taco seasoning optional
  • 1 cup chihuahua cheese shredded

Pico de Gallo

  • ½ cup tomato chopped (1 small tomato)
  • ½ cup white onion chopped
  • 1 tablespoon fresh cilantro chopped
  • 1 tablespoon jalapeño chopped
  • 2 tablespoons lime juice 1 lime squeezed

Instructions 

  • Preheat oven to 400℉. Grease 6 cavity muffin tin.
  • Press a mini tortilla into each cavity of muffin tin. Set aside.
    12 mini corn tortillas
    Close-up of a muffin tin with unbaked dough pressed into each cup, resembling small tart shells, perfect for making delicious Mexican Breakfast Cups.
  • In a medium mixing bowl or stand mixer fitted with the whisk attachment, beat eggs until scrambled and blend in taco seasoning (and optional chorizo).
    8 ounces chorizo, 12 large eggs, ½ teaspoon taco seasoning, 1 cup chihuahua cheese
    A wire whisk stirring a yellow egg mixture in a white bowl on a white marble surface, perfect for making delicious Mexican Breakfast Cups.
  • Pour mixture on into tortillas to fill each tin. Sprinkle with shredded cheese.
    A scoop of liquid filling is being poured into tortilla cups in a muffin tin, creating delightful Mexican Breakfast Cups.
  • Bake 15 minutes or until slightly golden and set.
    A close-up of six round Mexican Breakfast Cups in a muffin tin, with a golden-brown, smooth surface on top.
  • Meanwhile, combine tomato, onion, cilantro, jalapeno and lime juice to make pico de gallo. Add a spoonful to each tortilla to serve.
    ½ cup tomato, ½ cup white onion, 1 tablespoon fresh cilantro, 1 tablespoon jalapeño, 2 tablespoons lime juice
    A plate of mini Mexican Breakfast Cups filled with melted cheese, diced tomatoes, onions, and cilantro, arranged in a circle with a small bowl of salsa in the center.

Julie’s Tips

  • Spray muffin tin really well with nonstick cooking spray. 
  • Warm the tortillas in the microwave (place a stack inside a moist paper towel).

Variations

  • Chorizo is an optional (but delicious) addition. You can also add Ham or Sausage.
  • Add Sautéed Peppers
  • Use your Favorite Cheese
  • Add Black Beans or Pinto Beans
  • Diced Tomatoes
  • Add a can of Green Chiles

Storage Notes

Pack in a container with a fitted lid, and you can keep leftover tortilla egg cups in the fridge to use within 3-4 days. You can also store your muffin tin baked eggs for up to three months, making them perfect for meal prepping and planning.
Calories: 217kcal | Carbohydrates: 13g | Protein: 12g | Fat: 13g | Saturated Fat: 5g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 2g | Trans Fat: 0.02g | Cholesterol: 185mg | Sodium: 151mg | Potassium: 145mg | Fiber: 2g | Sugar: 1g | Vitamin A: 470IU | Vitamin C: 2mg | Calcium: 115mg | Iron: 2mg

Estimated nutrition information is provided as a courtesy and is not guaranteed.

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